Lineage Fate Labeling
Slow or fast lineages
764 lineages have at least 30% cells staying at undifferentiated.
332 lineages have at least 50% cells staying at undifferentiated, which may be termed as slow lineages (?)
Major fates
Code
def rowAnnot(r,s):
sr = r.loc[r>0].sort_values(ascending=False)
domC = "dom" if sr.max()>=80 else "non-dom"
if sr.shape[0] ==1:
domC = "pure"
return [s.join(list(sr.index)),
s.join(["%.0f"%v for v in list(sr)]),
domC]
def dfSort(df,newcol,s=";"):
df[newcol] = df.apply(lambda x: rowAnnot(x,"; "),
axis=1,result_type='expand')
return dfwe have 13 major classes:
Covering 90% of lineages ...
Please see below table for those 13 major classes.
| Lineage Class | # of lineages |
|---|---|
| Neu | pure | 621 |
| Mo | pure | 550 |
| Baso | pure | 208 |
| Meg | pure | 106 |
| Neu; Mo | non-dom | 95 |
| Lymphoid | pure | 85 |
| Neu; Mo | dom | 58 |
| Mo; Neu | dom | 40 |
| Mast | pure | 40 |
| Mo; Neu | non-dom | 30 |
| Baso; Neu | non-dom | 14 |
| Ccr7_DC | pure | 13 |
| Ery | pure | 12 |
A full result summarizing the exact fate percentage and across all classes can be found below:
| # of lineages | ||
|---|---|---|
| Lineage Class | fate % | |
| Neu | pure | 100 | 621 |
| Mo | pure | 100 | 550 |
| Baso | pure | 100 | 208 |
| Meg | pure | 100 | 106 |
| Lymphoid | pure | 100 | 85 |
| Mast | pure | 100 | 40 |
| Neu; Mo | non-dom | 50; 50 | 36 |
| 67; 33 | 23 | |
| Ccr7_DC | pure | 100 | 13 |
| Neu; Mo | dom | 86; 14 | 12 |
| Ery | pure | 100 | 12 |
| Mo; Neu | dom | 88; 12 | 10 |
| Eos | pure | 100 | 8 |
| Baso; Eos | non-dom | 75; 25 | 8 |
| pDC | pure | 100 | 7 |
| Neu; Mo | non-dom | 75; 25 | 7 |
| Neu; Mo | dom | 80; 20 | 7 |
| Neu; Baso | non-dom | 75; 25 | 7 |
| Neu; Mo | dom | 82; 18 | 6 |
| Mo; Neu | dom | 92; 8 | 6 |
| Neu; Mo | dom | 89; 11 | 5 |
| 95; 5 | 5 | |
| Mo; Neu | non-dom | 75; 25 | 5 |
| 67; 33 | 5 | |
| Mo; Neu | dom | 86; 14 | 5 |
| Mo; Baso; Neu | dom | 80; 10; 10 | 5 |
| Baso; Neu | non-dom | 50; 50 | 5 |
| Neu; Mo | non-dom | 56; 44 | 4 |
| 57; 43 | 4 | |
| Neu; Mo | dom | 83; 17 | 4 |
| 84; 16 | 4 | |
| 93; 7 | 4 | |
| Mo; Neu | non-dom | 71; 29 | 4 |
| Mo; Neu | dom | 89; 11 | 4 |
| 83; 17 | 4 | |
| Mo; Lymphoid | non-dom | 50; 50 | 4 |
| Mo; Lymphoid | dom | 80; 20 | 4 |
| Ccr7_DC; Lymphoid | non-dom | 50; 50 | 4 |
| Baso; Neu; Mast | non-dom | 54; 27; 19 | 4 |
| Baso; Neu | dom | 85; 15 | 4 |
| Neu; Mo; Meg | non-dom | 63; 36; 1 | 3 |
| Neu; Mo | non-dom | 54; 46 | 3 |
| 69; 31 | 3 | |
| 63; 37 | 3 | |
| Neu; Mo | dom | 88; 12 | 3 |
| 91; 9 | 3 | |
| Neu; Baso; Eos; Meg | non-dom | 38; 31; 23; 8 | 3 |
| Mo; Neu | non-dom | 60; 40 | 3 |
| 78; 22 | 3 | |
| Mo; Neu | dom | 90; 10 | 3 |
| 82; 18 | 3 | |
| Mo; Ccr7_DC | dom | 90; 10 | 3 |
| Meg; Neu | dom | 95; 5 | 3 |
| Meg; Ery | non-dom | 60; 40 | 3 |
| Mast; Ery | non-dom | 67; 33 | 3 |
| Ery; Meg | non-dom | 50; 50 | 3 |
| Baso; Neu; Mo | dom | 93; 4; 4 | 3 |
| Baso; Neu | non-dom | 67; 33 | 3 |
| Baso; Mo | dom | 90; 10 | 3 |
| Baso; Eos | dom | 83; 17 | 3 |
| Neu; Mo; Mast | non-dom | 79; 20; 1 | 2 |
| 70; 28; 3 | 2 | |
| Neu; Mo | non-dom | 71; 29 | 2 |
| 73; 27 | 2 | |
| Neu; Mo | dom | 81; 19 | 2 |
| 92; 8 | 2 | |
| Neu; Meg; Mast | dom | 96; 2; 2 | 2 |
| Neu; Meg | non-dom | 75; 25 | 2 |
| Neu; Ccr7_DC | non-dom | 67; 33 | 2 |
| Mo; Neu | dom | 93; 7 | 2 |
| Mo; Mast | non-dom | 67; 33 | 2 |
| Mo; Ccr7_DC; Lymphoid | non-dom | 71; 14; 14 | 2 |
| Mo; Ccr7_DC | non-dom | 75; 25 | 2 |
| Meg; Neu | non-dom | 50; 50 | 2 |
| Meg; Ery | non-dom | 67; 33 | 2 |
| Meg; Baso | non-dom | 50; 50 | 2 |
| Mast; Baso | non-dom | 50; 50 | 2 |
| Mast; Baso | dom | 83; 17 | 2 |
| Ery; Meg; Baso | non-dom | 67; 17; 17 | 2 |
| Ery; Meg | non-dom | 62; 38 | 2 |
| Ery; Mast | non-dom | 67; 33 | 2 |
| Eos; Neu | non-dom | 67; 33 | 2 |
| Eos; Neu | dom | 83; 17 | 2 |
| Baso; Neu; Eos | non-dom | 62; 25; 12 | 2 |
| Baso; Neu | non-dom | 60; 40 | 2 |
| 56; 44 | 2 | |
| Baso; Neu | dom | 90; 10 | 2 |
| 80; 20 | 2 | |
| Baso; Mo | non-dom | 67; 33 | 2 |
| Baso; Meg; Mast | non-dom | 72; 17; 11 | 2 |
| Baso; Meg | dom | 95; 5 | 2 |
| 80; 20 | 2 | |
| Baso; Mast | non-dom | 71; 29 | 2 |
| Baso; Eos | non-dom | 67; 33 | 2 |
| Baso; Eos | dom | 91; 9 | 2 |
| Neu; Mo; Mast; Baso | non-dom | 59; 35; 3; 3 | 1 |
| Neu; Mo; Mast | non-dom | 66; 32; 2 | 1 |
| Neu; Mo; Eos | dom | 91; 6; 3 | 1 |
| Neu; Mo; Ccr7_DC | non-dom | 60; 20; 20 | 1 |
| Neu; Mo; Baso; Eos | non-dom | 79; 18; 1; 1 | 1 |
| Neu; Mo; Baso | non-dom | 78; 21; 1 | 1 |
| 77; 19; 4 | 1 | |
| Neu; Mo | non-dom | 79; 21 | 1 |
| 77; 23 | 1 | |
| 76; 24 | 1 | |
| 74; 26 | 1 | |
| 65; 35 | 1 | |
| 60; 40 | 1 | |
| 58; 42 | 1 | |
| 55; 45 | 1 | |
| Neu; Mo | dom | 87; 13 | 1 |
| Neu; Meg; Mo | dom | 97; 1; 1 | 1 |
| Neu; Mast; Eos | dom | 98; 1; 1 | 1 |
| Neu; Mast | dom | 96; 4 | 1 |
| Neu; Baso; Mo | non-dom | 67; 17; 17 | 1 |
| Neu; Baso; Eos | dom | 82; 9; 9 | 1 |
| Neu; Baso | non-dom | 67; 33 | 1 |
| 56; 44 | 1 | |
| Neu; Baso | dom | 95; 5 | 1 |
| 90; 10 | 1 | |
| Mo; pDC | non-dom | 75; 25 | 1 |
| Mo; Neu; Meg | non-dom | 54; 42; 4 | 1 |
| Mo; Neu; Mast | non-dom | 56; 40; 4 | 1 |
| Mo; Neu; Ery | non-dom | 50; 43; 7 | 1 |
| Mo; Neu | non-dom | 70; 30 | 1 |
| 79; 21 | 1 | |
| 64; 36 | 1 | |
| 59; 41 | 1 | |
| 58; 42 | 1 | |
| 57; 43 | 1 | |
| 56; 44 | 1 | |
| 55; 45 | 1 | |
| 53; 47 | 1 | |
| 52; 48 | 1 | |
| Mo; Neu | dom | 81; 19 | 1 |
| 87; 13 | 1 | |
| 94; 6 | 1 | |
| Mo; Mast | dom | 97; 3 | 1 |
| Mo; Lymphoid; Ccr7_DC | non-dom | 64; 27; 9 | 1 |
| Mo; Lymphoid | non-dom | 67; 33 | 1 |
| Mo; Lymphoid | dom | 94; 6 | 1 |
| 93; 7 | 1 | |
| Mo; Ery | dom | 92; 8 | 1 |
| Mo; Ccr7_DC | dom | 93; 7 | 1 |
| Meg; Neu | non-dom | 76; 24 | 1 |
| Meg; Mo | non-dom | 50; 50 | 1 |
| Meg; Mast | non-dom | 75; 25 | 1 |
| Meg; Mast | dom | 80; 20 | 1 |
| Meg; Ery | dom | 88; 12 | 1 |
| 80; 20 | 1 | |
| Meg; Baso | non-dom | 67; 33 | 1 |
| Mast; Neu | non-dom | 50; 50 | 1 |
| 57; 43 | 1 | |
| Mast; Neu | dom | 89; 11 | 1 |
| Mast; Meg | non-dom | 67; 33 | 1 |
| Mast; Meg | dom | 83; 17 | 1 |
| Mast; Ery; Baso; Eos | non-dom | 77; 8; 8; 8 | 1 |
| Mast; Baso; Mo | non-dom | 50; 42; 8 | 1 |
| Mast; Baso | non-dom | 67; 33 | 1 |
| 56; 44 | 1 | |
| Mast; Baso | dom | 88; 12 | 1 |
| 91; 9 | 1 | |
| Lymphoid; pDC | non-dom | 67; 33 | 1 |
| Lymphoid; Mo | non-dom | 75; 25 | 1 |
| Ery; Meg; Mast | non-dom | 43; 43; 14 | 1 |
| Ery; Meg | non-dom | 71; 29 | 1 |
| 67; 33 | 1 | |
| Eos; Baso; Neu | non-dom | 40; 30; 30 | 1 |
| Eos; Baso | non-dom | 56; 44 | 1 |
| Eos; Baso | dom | 80; 20 | 1 |
| Baso; Neu | non-dom | 57; 43 | 1 |
| 75; 25 | 1 | |
| Baso; Neu | dom | 86; 14 | 1 |
| 91; 9 | 1 | |
| Baso; Mo | dom | 93; 7 | 1 |
| 98; 2 | 1 | |
| Baso; Meg; Neu | dom | 96; 2; 2 | 1 |
| Baso; Mast; Mo | dom | 94; 3; 3 | 1 |
| Baso; Mast | non-dom | 60; 40 | 1 |
| Baso; Mast | dom | 86; 14 | 1 |
| Baso; Ery; Mo | non-dom | 50; 44; 6 | 1 |
| Baso; Ery | dom | 80; 20 | 1 |
| Baso; Eos; Neu | non-dom | 35; 32; 32 | 1 |
| Baso; Eos | dom | 98; 2 | 1 |
| 96; 4 | 1 | |
| 95; 5 | 1 | |
| 80; 20 | 1 |